Publications

2021

U. Günther, K. I. S. Harrington, R. Dachselt and I. F. Sbalzarini: Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. In: Bartoli A., Fusiello A. (eds) Computer Vision – ECCV 2020 Workshops. ECCV 2020. Lecture Notes in Computer Science, vol 12535. Springer, Cham. (2021) / GitHub

2020

T. Dornheim, M. Invernizzi, J. Vorberger, and B. Hirshberg: Attenuating the fermion sign problem in path integral Monte Carlo simulations using the Bogoliubov inequality and thermodynamic integration. Journal of Chemical Physics 153, 234104 (2020)

T. Dornheim and J. Vorberger: Finite-size effects in the reconstruction of dynamic properties from ab initio path integral Monte Carlo simulations. Physical Review E 102, 063301 (2020)

T. Dornheim, A. Cangi, K. Ramakrishna, M. Böhme, S. Tanaka, and J. Vorberger: Effective Static Approximation: A Fast and Reliable Tool for Warm-Dense Matter Theory. Physical Review Letters 125, 235001 (2020)

P. Hamann, T. Dornheim, J. Vorberger, Z. A. Moldabekov, M. Bonitz: Dynamic properties of the warm dense electron gas based on ab initio path integral Monte Carlo simulations. Physical Review B 102, 125150 (2020) / arXiv

A. Yilmaz, K. Hunger, T. Dornheim, S. Groth, M. Bonitz: Restricted configuration path integral Monte Carlo. The Journal of Chemical Physics 153, 124114 (2020). / arXiv

P. Hamann, J. Vorberger, T. Dornheim, Z. Moldabekov, M. Bonitz: Ab initio results for the plasmon dispersion and damping of the warm dense electron gas. Contributions to Plasma Physics (2020) / arXiv

T. Dornheim, Jan Vorberger, Michael Bonitz: Nonlinear Electronic Density Response in Warm Dense Matter. Physical Review Letters 125, 085001 (2020) / arXiv

T. Dornheim: Path Integral Monte Carlo Simulations of Quantum Dipole Systems in Traps: Superfluidity, Quantum Statistics, and Structural Properties. Physical Review A 102, 023307 (2020)

U. Günther, Kyle I.S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini: Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. BioImageComputing at ECCV2020 (accepted). arXiv / video

N. Mukharamova, S. Lazarev, J.-M. Meijer, O. Y. Gorobtsov, A. Singer, M. Chollet, M. Bussmann, D. Dzhigaev, Y. Feng, M. Garten, A. Huebl, T. Kluge, R. P. Kurta, V. Lipp, R. Santra, M. Sikorski, S. Song, G. Williams, D. Zhu, B. Ziaja-Motyka, T. E. Cowan, A. V. Petukhov & I. A. Vartanyants: Femtosecond laser produced periodic plasma in a colloidal crystal probed by XFEL radiation. Scientific Reports 10, 10780 (2020) / DOI: 10.1038/s41598-020-67214-z

U. Günther, K. I. S. Harrington: Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community. VisGap Workshop at Eurographics & Eurovis 2020 / arXiv / talk

R. Martinez-Garcia, C. H. Fleming, R. Seppelt, W. F. Fagan, J. M. Calabrese: How range residency and long-range perception change encounter rates. Journal of Theoretical Biology 498, 110267 (2020)

T. Dornheim, Zh. A. Moldabekov, J. Vorberger, and S. Groth: Ab initio path integral Monte Carlo simulation of the uniform electron gas in the high energy density regime. Plasma Physics and Controlled Fusion 62/7 (2020)

K. Ramakrishna, T. Dornheim, and J. Vorberger: Influence of finite temperature exchange-correlation effects in hydrogen. Physical Review B 101, 195129 (2020)

Zh. A. Moldabekov, T. Dornheim, M. Bonitz, and T. S. Ramazanov: Ion energy-loss characteristics and friction in a free-electron gas at warm dense matter and nonideal dense plasma conditions. Physical Review E 101, 053203 (2020)

M. Bonitz, T. Dornheim, Zh. A. Moldabekov, S. Zhang, P. Hamann, H. Kählert, A. Filinov, K. Ramakrishna, and J. Vorberger: Ab initio simulation of warm dense matter. Physics of Plasmas 27, 042710 (2020)

T. Dornheim, T. Sjostrom, S. Tanaka, and J. Vorberger, Strongly coupled electron liquid: Ab initio path integral Monte Carlo simulations and dielectric theories, Physical Review B 101, 045129 (2020)

2019

T. Dornheim, S. Groth, A. Filinov, and M. Bonitz, Path integral Monte Carlo simulation of degenerate electrons: Permutation-cycle properties, Journal of Chemical Physics 151, 014108 (2019)

S. Groth, T. Dornheim, and J. Vorberger, Ab initio path integral Monte Carlo approach to the static and dynamic density response of the uniform electron gas, Physical Review B 99, 235122 (2019)

T. Dornheim, The Fermion Sign Problem in Path Integral Monte Carlo Simulations: Quantum Dots, Ultracold Atoms, and Warm Dense Matter, Physical Review E 100, 023307 (2019)

T. Dornheim, J. Vorberger, S. Groth, N. Hoffmann, Zh.A. Moldabekov, and M. Bonitz, The Static Local Field Correction of the Warm Dense Electron Gas: An ab Initio Path Integral Monte Carlo Study and Machine Learning Representation, Journal of Chemical Physics 151, 194104 (2019)

U. Günther, T. Pietzsch, A. Gupta, K. I.S. Harrington, P. Tomancak, S. Gumhold, I. F. Sbalzarini: Scenery: Flexible Virtual Reality Visualization on the Java VM, IEEE VIS 2019, Vancouver / arXiv / code / conference talk

Pre-prints

R. Martinez-Garcia, C. Cabal, J. A. Bonachela, J. M. Calabrese, E. Hernández-García, C. López, C. E. Tarnita: Spatial self-organization of vegetation in water-limited systems: mechanistic causes, empirical tests, and ecosystem-level consequences. arXiv

K. Hunger, T. Schoof, T. Dornheim, M. Bonitz, A. Filinov: Momentum distribution function and short-range correlations of the warm dense electron gas — ab initio quantum Monte Carlo results. arXiv

T. Dornheim, Z. A. Moldabekov: Analytical representation of the Local Field Correction of the Uniform Electron Gas within the Effective Static Approximation. arXiv

M. J. Noonan, R. Martinez-Garcia, G. H. Davis, M. C. Crofoot, R. Kays, B. T. Hirsch, D. Caillaud, E. Payne, A. Sih, D. L. Sinn, O. Spiegel, W. F. Fagan, C. H. Fleming, J. M. Calabrese: Estimating encounter location distributions from animal tracking data. bioRxiv

J. M. Calabrese, J. Demers: How optimal allocation of limited testing capacity changes epidemic dynamics. medRxiv

J. M. Calabrese, C. H. Fleming, M. J. Noonan, X. Dong: ctmmweb: A graphical user interface for autocorrelation-informed home range estimation. bioRxiv

A. Gupta, P. Incardona, A. D. Aydin, S. Gumhold, U. Günther, and I. F. Sbalzarini (2020): An Architecture for Interactive In Situ Visualization and its Transparent Implementation in Open FPM. InISAV’20 In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization (ISAV’20), November 12, 2020, Atlanta, GA, USA

J. A. Ellis, A. Cangi, N. A. Modine, J. A. Stephens, A. P. Thompson, S. Rajamanickam: Accelerating Finite-temperature Kohn-Sham Density Functional Theory with Deep Neural Networks. arXiv

K. Ramakrishna, A. Cangi, T. Dornheim, J. Vorberger: First-principles modeling of plasmons in aluminum under ambient and extreme conditions. arXiv

P. Stiller, F. Bethke, M. Böhme, R. Pausch, S. Torge, A. Debus, J. Vorberger, M. Bussmann, N. Hoffmann: Large-scale Neural Solvers for Partial Differential Equations. arXiv

T. Dornheim, M. Invernizzi, J. Vorberger, B. Hirshberg: Attenuating the fermion sign problem in path integral Monte Carlo simulations using the Bogoliubov inequality and thermodynamic integration. arXiv

Z. Moldabekov, T. Dornheim, M. Bonitz: Screening of a test charge in a free-electron gas at warm dense matter and dense non-ideal plasma conditions. arXiv

T. Dornheim, A. Cangi, K. Ramakrishna, M. Böhme, S. Tanaka, J. Vorberger: Effective Static Approximation: A Fast and Reliable Tool for Warm Dense Matter Theory. arXiv

C. Arshadi, M. Eddison, U. Günther, K. Harrington, T. Ferreira: SNT: A Unifying Toolbox for Quantification of Neuronal Anatomy. bioRxiv

C. H. Fleming, J. Drescher-Lehman, M. J. Noonan, T. S. B. Akre, D. J. Brown, M. M. Cochrane, N. Dejid, V. DeNicola, C. S. DePerno, J. N. Dunlop, N. P. Gould, J. Hollins, H. Ishii, Y. Kaneko, R. Kays, S. S. Killen, B. Koeck, S. A. Lambertucci, S. D. LaPoint, E. P. Medici, B.-U. Meyburg, T. A. Miller, R. A. Moen, T. Mueller, T. Pfeiffer, K. N. Pike, A. Roulin, K. Safi, R. Séchaud, A. K. Scharf, J. M. Shephard, J. A. Stabach, K. Stein, C. M. Tonra, K. Yamazaki, W. F. Fagan, J. M. Calabrese: A comprehensive framework for handling location error in animal tracking data. DOI: 10.1101/2020.06.12.130195 / bioRxiv

T. Dornheim, Jan Vorberger: Finite-size effects in the reconstruction of dynamic properties from ab initio path integral Monte-Carlo simulations. / arXiv

J. M Calabrese, Christen H Fleming, Michael J Noonan, Xianghui Dong: ctmmweb: A graphical user interface for autocorrelation-informed home range estimation. DOI: 10.1101/2020.05.11.087932 / bioRxiv