Publications

2020

U. Günther, Kyle I.S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini: Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. BioImageComputing at ECCV2020 (accepted). arXiv / video

N. Mukharamova, S. Lazarev, J.-M. Meijer, O. Y. Gorobtsov, A. Singer, M. Chollet, M. Bussmann, D. Dzhigaev, Y. Feng, M. Garten, A. Huebl, T. Kluge, R. P. Kurta, V. Lipp, R. Santra, M. Sikorski, S. Song, G. Williams, D. Zhu, B. Ziaja-Motyka, T. E. Cowan, A. V. Petukhov & I. A. Vartanyants: Femtosecond laser produced periodic plasma in a colloidal crystal probed by XFEL radiation. Scientific Reports 10, 10780 (2020) / DOI: 10.1038/s41598-020-67214-z

U. Günther, K. I. S. Harrington: Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community. VisGap Workshop at Eurographics & Eurovis 2020 / arXiv / talk

R. Martinez-Garcia, C. H. Fleming, R. Seppelt, W. F. Fagan, J. M. Calabrese: How range residency and long-range perception change encounter rates. Journal of Theoretical Biology 498, 110267 (2020)

T. Dornheim, Zh. A. Moldabekov, J. Vorberger, and S. Groth: Ab initio path integral Monte Carlo simulation of the uniform electron gas in the high energy density regime. Plasma Physics and Controlled Fusion 62/7 (2020)

K. Ramakrishna, T. Dornheim, and J. Vorberger: Influence of finite temperature exchange-correlation effects in hydrogen. Physical Review B 101, 195129 (2020)

Zh. A. Moldabekov, T. Dornheim, M. Bonitz, and T. S. Ramazanov: Ion energy-loss characteristics and friction in a free-electron gas at warm dense matter and nonideal dense plasma conditions. Physical Review E 101, 053203 (2020)

M. Bonitz, T. Dornheim, Zh. A. Moldabekov, S. Zhang, P. Hamann, H. Kählert, A. Filinov, K. Ramakrishna, and J. Vorberger: Ab initio simulation of warm dense matter. Physics of Plasmas 27, 042710 (2020)

T. Dornheim, T. Sjostrom, S. Tanaka, and J. Vorberger, Strongly coupled electron liquid: Ab initio path integral Monte Carlo simulations and dielectric theories, Physical Review B 101, 045129 (2020)

2019

T. Dornheim, S. Groth, A. Filinov, and M. Bonitz, Path integral Monte Carlo simulation of degenerate electrons: Permutation-cycle properties, Journal of Chemical Physics 151, 014108 (2019)

S. Groth, T. Dornheim, and J. Vorberger, Ab initio path integral Monte Carlo approach to the static and dynamic density response of the uniform electron gas, Physical Review B 99, 235122 (2019)

T. Dornheim, The Fermion Sign Problem in Path Integral Monte Carlo Simulations: Quantum Dots, Ultracold Atoms, and Warm Dense Matter, Physical Review E 100, 023307 (2019)

T. Dornheim, J. Vorberger, S. Groth, N. Hoffmann, Zh.A. Moldabekov, and M. Bonitz, The Static Local Field Correction of the Warm Dense Electron Gas: An ab Initio Path Integral Monte Carlo Study and Machine Learning Representation, Journal of Chemical Physics 151, 194104 (2019)

U. Günther, T. Pietzsch, A. Gupta, K. I.S. Harrington, P. Tomancak, S. Gumhold, I. F. Sbalzarini: Scenery: Flexible Virtual Reality Visualization on the Java VM, IEEE VIS 2019, Vancouver / arXiv / code / conference talk

Pre-prints

P. Hamann, T. Dornheim, J. Vorberger, Z. A. Moldabekov, M. Bonitz: Dynamic properties of the warm dense electron gas: an ab initio path integral Monte Carlo approach. arXiv

A. Yilmaz, K. Hunger, T. Dornheim, S. Groth, M. Bonitz: Restricted configuration path integral Monte Carlo. arXiv

C. Arshadi, M. Eddison, U. Günther, K. Harrington, T. Ferreira: SNT: A Unifying Toolbox for Quantification of Neuronal Anatomy. bioRxiv

C. H. Fleming, J. Drescher-Lehman, M. J. Noonan, T. S. B. Akre, D. J. Brown, M. M. Cochrane, N. Dejid, V. DeNicola, C. S. DePerno, J. N. Dunlop, N. P. Gould, J. Hollins, H. Ishii, Y. Kaneko, R. Kays, S. S. Killen, B. Koeck, S. A. Lambertucci, S. D. LaPoint, E. P. Medici, B.-U. Meyburg, T. A. Miller, R. A. Moen, T. Mueller, T. Pfeiffer, K. N. Pike, A. Roulin, K. Safi, R. Séchaud, A. K. Scharf, J. M. Shephard, J. A. Stabach, K. Stein, C. M. Tonra, K. Yamazaki, W. F. Fagan, J. M. Calabrese: A comprehensive framework for handling location error in animal tracking data. DOI: 10.1101/2020.06.12.130195 / bioRxiv

T. Dornheim: Ab initio Path Integral Monte Carlo Simulations of Quantum Dipole Systems in Traps: Superfluidity, Quantum Statistics, and Structural Properties. / arXiv

T. Dornheim, Jan Vorberger: Finite-size effects in the reconstruction of dynamic properties from ab initio path integral Monte-Carlo simulations. / arXiv

T. Dornheim, Jan Vorberger, Michael Bonitz: Nonlinear Electronic Density Response in Warm Dense Matter. / arXiv

J. M Calabrese, Christen H Fleming, Michael J Noonan, Xianghui Dong: ctmmweb: A graphical user interface for autocorrelation-informed home range estimation. DOI: 10.1101/2020.05.11.087932 / bioRxiv